Variant report

Variant	rs6796868
Chromosome Location	chr3:17003529-17003530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12054464	0.97[ASN][1000 genomes]
rs12233493	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12233538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12233541	0.90[ASN][1000 genomes]
rs13073804	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13083189	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13096536	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1550518	0.97[ASN][1000 genomes]
rs17042926	0.84[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs17042972	0.90[ASN][1000 genomes]
rs17200543	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17272740	0.97[ASN][1000 genomes]
rs17272754	0.88[CHD][hapmap]
rs17272810	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17272817	0.81[ASN][1000 genomes]
rs17272831	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28932173	0.84[ASN][1000 genomes]
rs34437014	0.97[ASN][1000 genomes]
rs34824028	0.90[ASN][1000 genomes]
rs35307172	0.97[ASN][1000 genomes]
rs35941157	0.83[EUR][1000 genomes]
rs3935970	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4130495	0.82[ASW][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap]
rs4290789	0.90[ASN][1000 genomes]
rs4452307	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs55942882	0.97[ASN][1000 genomes]
rs56060350	0.84[ASN][1000 genomes]
rs62246031	0.97[ASN][1000 genomes]
rs62247182	0.90[ASN][1000 genomes]
rs6442662	0.87[ASW][hapmap];0.80[LWK][hapmap];1.00[YRI][hapmap]
rs6769249	0.84[CEU][hapmap];0.89[CHD][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs6775782	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs6778233	0.89[CHD][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap]
rs6789069	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7616589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7652293	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9815788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9834723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9845137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9845551	0.82[ASW][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap]
rs9858664	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870977	0.82[ASW][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17005000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
3	chr3:16993400-17005200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:17000600-17008400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17001400-17008400	Weak transcription	Primary T cells from cord blood	blood
6	chr3:17001600-17003600	Enhancers	Fetal Heart	heart
7	chr3:17001800-17003800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:17002200-17003600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:17002600-17003600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:17002600-17003800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:17002600-17004000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:17002800-17003600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:17002800-17003600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:17002800-17003600	Enhancers	Right Ventricle	heart
15	chr3:17002800-17003800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:17003000-17003600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:17003000-17003600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:17003000-17003600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:17003000-17004000	Enhancers	Left Ventricle	heart
20	chr3:17003000-17004000	Enhancers	Ovary	ovary
21	chr3:17003200-17003600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:17003200-17003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:17003200-17003600	Enhancers	Placenta	Placenta
24	chr3:17003200-17003800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:17003400-17003600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:17003400-17003600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:17003400-17003600	Enhancers	Spleen	Spleen

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