Variant report

Variant	rs9870977
Chromosome Location	chr3:17020573-17020574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16999677..17001737-chr3:17018977..17021137,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12233493	0.92[EUR][1000 genomes]
rs13072853	0.81[EUR][1000 genomes]
rs17042926	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17272754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28498854	0.93[ASN][1000 genomes]
rs34053933	0.98[ASN][1000 genomes]
rs34126040	0.98[ASN][1000 genomes]
rs35941157	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130495	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4452307	0.84[YRI][hapmap]
rs58855245	0.98[ASN][1000 genomes]
rs59256854	0.98[ASN][1000 genomes]
rs6442659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442662	0.84[YRI][hapmap]
rs6769249	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6775782	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6778233	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796868	0.82[ASW][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap]
rs6805550	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612924	0.85[AMR][1000 genomes]
rs7645276	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9845551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858664	0.81[EUR][1000 genomes]
rs9876768	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9881997	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
3	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17016000-17020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
8	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:17017400-17023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:17017400-17026600	Weak transcription	Right Ventricle	heart
12	chr3:17017400-17027200	Weak transcription	Ovary	ovary
13	chr3:17017400-17027400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:17017400-17027400	Weak transcription	Right Atrium	heart
15	chr3:17017600-17021400	Weak transcription	Left Ventricle	heart
16	chr3:17017600-17022000	Weak transcription	Lung	lung
17	chr3:17017600-17023200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:17018000-17023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:17018400-17021600	Weak transcription	Dnd41	blood
20	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:17019400-17023200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:17019400-17027200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:17019600-17020600	Enhancers	Liver	Liver
24	chr3:17019600-17022800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:17019800-17020600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:17020000-17020600	Enhancers	Adipose Nuclei	Adipose
27	chr3:17020200-17020800	ZNF genes & repeats	GM12878-XiMat	blood
28	chr3:17020400-17024000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:17020400-17027200	Weak transcription	Psoas Muscle	Psoas
30	chr3:17020400-17034000	Weak transcription	Small Intestine	intestine

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