The 2.0 version of rSNPBase

Variant report

Variant rs6805550
Chromosome Location chr3:17039321-17039322
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17026800-17041200 Enhancers Primary T helper cells PMA-I stimulated --
2 chr3:17028400-17039600 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr3:17029400-17042200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr3:17031800-17041200 Enhancers Primary T helper cells fromperipheralblood blood
5 chr3:17033400-17040200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
6 chr3:17034400-17044800 Weak transcription Aorta Aorta
7 chr3:17034800-17039600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr3:17035000-17039400 Weak transcription Primary monocytes fromperipheralblood blood
9 chr3:17035000-17047200 Weak transcription Ovary ovary
10 chr3:17035600-17039800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr3:17036000-17041600 Enhancers Primary T cells from cord blood blood
12 chr3:17037000-17053200 Weak transcription Fetal Intestine Small intestine
13 chr3:17037200-17039600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr3:17037600-17039600 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr3:17037600-17039800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr3:17037600-17040200 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr3:17037600-17050800 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr3:17037800-17039400 Weak transcription Primary B cells from peripheral blood blood
19 chr3:17037800-17039600 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr3:17037800-17039600 Weak transcription Liver Liver
21 chr3:17037800-17040000 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr3:17037800-17040000 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr3:17037800-17044800 Weak transcription Thymus Thymus
24 chr3:17038000-17040000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr3:17038000-17040000 Weak transcription Adipose Nuclei Adipose
26 chr3:17038000-17040600 Weak transcription Pancreas Pancrea
27 chr3:17038000-17044800 Weak transcription Right Atrium heart
28 chr3:17038000-17044800 Weak transcription Right Ventricle heart
29 chr3:17038000-17044800 Weak transcription Spleen Spleen
30 chr3:17038000-17047800 Weak transcription Gastric stomach
31 chr3:17038200-17039400 Weak transcription Primary hematopoietic stem cells blood
32 chr3:17038200-17045000 Weak transcription Psoas Muscle Psoas
33 chr3:17038800-17039400 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr3:17038800-17040200 Enhancers Primary B cells from cord blood blood
35 chr3:17038800-17040200 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr3:17038800-17041800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr3:17039000-17039400 Weak transcription Fetal Heart heart
38 chr3:17039200-17039400 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr3:17039200-17039600 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr3:17039200-17039600 Enhancers Primary Natural Killer cells fromperipheralblood blood
41 chr3:17039200-17039600 Enhancers GM12878-XiMat blood
42 chr3:17039200-17039800 Enhancers Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015