Variant report

Variant	rs35100600
Chromosome Location	chr3:17102168-17102169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12054464	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12233493	0.81[ASN][1000 genomes]
rs12233538	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12233541	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13066204	0.85[EUR][1000 genomes]
rs13073804	0.82[AMR][1000 genomes]
rs13083189	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13085309	0.84[EUR][1000 genomes]
rs13096536	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1550518	0.86[AMR][1000 genomes]
rs17272740	0.86[AMR][1000 genomes]
rs17272810	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17272817	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17272831	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28498854	0.92[EUR][1000 genomes]
rs34053933	0.82[EUR][1000 genomes]
rs34437014	0.85[AMR][1000 genomes]
rs34824028	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35307172	0.90[AMR][1000 genomes]
rs3935970	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4290789	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55942882	0.85[AMR][1000 genomes]
rs56060350	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58855245	0.82[EUR][1000 genomes]
rs59256854	0.82[EUR][1000 genomes]
rs62246031	0.85[AMR][1000 genomes]
rs62247182	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6789069	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71627166	0.82[EUR][1000 genomes]
rs7616589	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7652293	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7652874	0.83[EUR][1000 genomes]
rs9815788	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9834723	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9835432	0.81[EUR][1000 genomes]
rs9845137	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9876768	0.90[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:17083000-17109600	Weak transcription	Fetal Intestine Large	intestine
3	chr3:17083200-17111600	Weak transcription	Stomach Mucosa	stomach
4	chr3:17085800-17112200	Weak transcription	Gastric	stomach
5	chr3:17089400-17109000	Weak transcription	Dnd41	blood
6	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
7	chr3:17089600-17111000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:17089800-17110400	Weak transcription	Fetal Thymus	thymus
9	chr3:17089800-17112200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:17089800-17116000	Weak transcription	Thymus	Thymus
11	chr3:17090400-17110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:17090600-17110400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:17091600-17103800	Strong transcription	Primary T cells from cord blood	blood
14	chr3:17092000-17109200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:17092200-17109000	Weak transcription	Liver	Liver
16	chr3:17094800-17112200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:17095000-17112000	Weak transcription	Right Atrium	heart
18	chr3:17095200-17112200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:17095400-17106800	Weak transcription	Fetal Kidney	kidney
20	chr3:17095400-17108800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:17095400-17109000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:17095400-17109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:17095400-17110200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:17095400-17114400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
26	chr3:17095400-17120600	Weak transcription	Lung	lung
27	chr3:17095800-17111600	Weak transcription	Brain Germinal Matrix	brain
28	chr3:17096600-17118000	Weak transcription	Fetal Intestine Small	intestine
29	chr3:17097000-17109000	Weak transcription	Adipose Nuclei	Adipose
30	chr3:17097200-17108200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:17097200-17109200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:17097200-17112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:17097200-17112000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:17097200-17113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:17097400-17107000	Weak transcription	Psoas Muscle	Psoas
36	chr3:17097400-17109000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:17097600-17103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:17097600-17109000	Weak transcription	Placenta	Placenta
39	chr3:17097600-17112200	Weak transcription	Fetal Stomach	stomach
40	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
41	chr3:17098000-17109000	Weak transcription	GM12878-XiMat	blood
42	chr3:17098400-17109000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:17098600-17102400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr3:17099000-17109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:17099000-17112200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:17099400-17109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:17099800-17103200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:17099800-17104400	Weak transcription	Left Ventricle	heart
49	chr3:17099800-17109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:17100800-17109400	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links