Variant report

Variant	rs9812906
Chromosome Location	chr3:17525505-17525506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 267 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:251)

rs_ID	r²[population]
rs10212255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10510475	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10510477	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10865749	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11128836	0.88[CEU][hapmap]
rs11128837	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128838	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs11128839	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11128848	0.81[EUR][1000 genomes]
rs1120412	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708391	0.85[EUR][1000 genomes]
rs11713917	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11717644	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11927654	0.89[CEU][hapmap]
rs12487248	0.92[CEU][hapmap]
rs12488093	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12488687	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12493567	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12494513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12497320	0.80[EUR][1000 genomes]
rs13061771	0.81[EUR][1000 genomes]
rs13065637	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13071934	0.80[EUR][1000 genomes]
rs13083917	0.89[CEU][hapmap]
rs13085167	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13093375	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13095571	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13096559	0.92[CEU][hapmap]
rs13097908	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs13317478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13318609	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13318886	0.89[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs13320647	0.89[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes]
rs13320693	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13321297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13322641	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13327810	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13353435	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1374197	0.89[CEU][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1446303	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17043422	0.96[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17043492	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17043494	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17043539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17043541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17200818	0.89[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17200839	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17273020	1.00[CHB][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1867772	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs187303	0.92[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2028874	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2060623	0.89[CEU][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap]
rs2060624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs2060625	0.89[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2060627	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2084572	0.88[EUR][1000 genomes]
rs2121262	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2247106	0.86[EUR][1000 genomes]
rs2470347	0.88[EUR][1000 genomes]
rs2470577	0.88[EUR][1000 genomes]
rs2470580	0.96[CEU][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2592099	0.84[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2596652	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2596674	0.87[EUR][1000 genomes]
rs2596675	0.88[EUR][1000 genomes]
rs2596677	0.88[EUR][1000 genomes]
rs2596678	0.88[EUR][1000 genomes]
rs2596679	0.88[EUR][1000 genomes]
rs2596680	0.88[EUR][1000 genomes]
rs2596681	0.88[EUR][1000 genomes]
rs2733478	0.88[EUR][1000 genomes]
rs2733479	0.87[EUR][1000 genomes]
rs2733481	0.88[EUR][1000 genomes]
rs2733485	0.88[EUR][1000 genomes]
rs2733487	0.88[EUR][1000 genomes]
rs2733491	0.87[EUR][1000 genomes]
rs2733493	0.87[EUR][1000 genomes]
rs2733514	0.88[EUR][1000 genomes]
rs2733517	0.87[EUR][1000 genomes]
rs2733523	0.88[EUR][1000 genomes]
rs2733524	0.88[EUR][1000 genomes]
rs283906	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs283907	0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs283908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs283909	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs283911	0.89[EUR][1000 genomes]
rs283912	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs283913	0.89[EUR][1000 genomes]
rs283915	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs283916	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs283917	0.92[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs283918	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs283919	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs283921	0.90[EUR][1000 genomes]
rs283922	0.88[EUR][1000 genomes]
rs283923	0.88[EUR][1000 genomes]
rs283925	0.88[EUR][1000 genomes]
rs283926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283927	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs283928	0.83[EUR][1000 genomes]
rs283929	0.89[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs283930	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs283931	0.96[CEU][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs283934	0.85[EUR][1000 genomes]
rs283935	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs283936	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs283937	0.88[EUR][1000 genomes]
rs283938	0.91[EUR][1000 genomes]
rs283940	0.89[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs283941	0.84[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs283942	0.82[EUR][1000 genomes]
rs283943	0.84[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs283944	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs283945	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs283946	0.84[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs283947	0.83[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs283948	0.84[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs283949	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs28408438	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28454413	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34487714	0.80[EUR][1000 genomes]
rs34502358	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34892692	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35126965	0.88[EUR][1000 genomes]
rs35234876	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35521582	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35642812	0.80[EUR][1000 genomes]
rs35697509	0.80[EUR][1000 genomes]
rs4243835	0.92[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs4243836	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243838	0.80[EUR][1000 genomes]
rs4312642	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4377510	0.89[CEU][hapmap]
rs4431138	0.80[EUR][1000 genomes]
rs4444738	0.81[EUR][1000 genomes]
rs4470554	0.89[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap]
rs4484221	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs4513482	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs4566567	0.81[EUR][1000 genomes]
rs4568172	0.81[EUR][1000 genomes]
rs4582042	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4602424	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4615062	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4637311	0.87[CEU][hapmap]
rs4908964	0.80[EUR][1000 genomes]
rs4908987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4908992	0.92[CEU][hapmap]
rs4909012	0.80[EUR][1000 genomes]
rs5014632	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs58307801	0.85[EUR][1000 genomes]
rs62245914	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62245947	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6442679	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6442680	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6442681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6442682	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6442683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6577616	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577619	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6577622	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs6762516	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6763593	0.89[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6763681	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs6768637	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs6772394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6779834	0.80[AMR][1000 genomes]
rs6784025	0.91[CEU][hapmap]
rs6785870	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6787756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6788763	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6789697	0.92[CEU][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs6792422	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes]
rs6792443	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6795189	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6797952	0.80[AMR][1000 genomes]
rs6799259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6801690	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6807020	0.89[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs6809062	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6810235	0.80[EUR][1000 genomes]
rs728022	0.87[EUR][1000 genomes]
rs7614318	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7623979	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7625175	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7625855	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630286	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7630433	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7632240	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7632989	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7636787	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7642719	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7644020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7644389	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7645756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7647905	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7647914	0.81[EUR][1000 genomes]
rs7647928	0.81[EUR][1000 genomes]
rs7648883	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651278	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7651998	0.89[CEU][hapmap]
rs7652792	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs767685	0.88[EUR][1000 genomes]
rs9310516	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9310519	0.81[TSI][hapmap]
rs9310526	0.89[CEU][hapmap]
rs9310528	0.89[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs9681232	0.80[EUR][1000 genomes]
rs9681617	0.81[EUR][1000 genomes]
rs9681644	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs9756494	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs9757339	0.82[AMR][1000 genomes]
rs9810675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9812199	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9813532	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9815204	0.92[CEU][hapmap]
rs9817290	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9820703	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs9821318	0.89[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9821955	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9823064	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9823767	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs9824191	1.00[CHB][hapmap]
rs9824952	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9830240	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs9835988	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9839588	0.89[CEU][hapmap]
rs9843640	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9847461	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9847477	0.89[CEU][hapmap]
rs9848610	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9848766	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs9850127	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9851518	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9852861	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9853571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9854201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9855515	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs9857910	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs9861749	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9864494	0.92[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9869999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9874826	0.81[EUR][1000 genomes]
rs9875973	0.81[AMR][1000 genomes]
rs9878954	0.92[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs9880971	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9881089	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9881850	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.87[LWK][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9882273	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9883518	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9985472	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9812906	LSM3	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17476200-17530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:17512000-17538000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:17516600-17537600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:17519600-17530200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:17520200-17537000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:17520600-17527800	Weak transcription	NHEK	skin
7	chr3:17521000-17530200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:17521800-17535600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:17522600-17537200	Weak transcription	Fetal Kidney	kidney
10	chr3:17522800-17528200	Weak transcription	Primary T cells from cord blood	blood
11	chr3:17522800-17530800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:17522800-17535600	Weak transcription	Left Ventricle	heart
13	chr3:17522800-17535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:17522800-17541400	Weak transcription	Ovary	ovary
15	chr3:17523000-17526000	Weak transcription	Gastric	stomach
16	chr3:17523000-17528000	Weak transcription	Dnd41	blood
17	chr3:17523000-17528600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:17523000-17530000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:17523000-17530000	Weak transcription	Thymus	Thymus
20	chr3:17523000-17530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:17523000-17530200	Weak transcription	Fetal Stomach	stomach
22	chr3:17523000-17530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:17523000-17530600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:17523000-17535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:17523000-17535600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:17523000-17541400	Weak transcription	Pancreas	Pancrea
27	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
28	chr3:17523200-17528000	Weak transcription	Primary B cells from cord blood	blood
29	chr3:17523200-17528000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:17523200-17528200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr3:17523200-17528200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:17523200-17535200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:17523200-17556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:17523400-17525800	Weak transcription	Fetal Lung	lung
35	chr3:17523400-17530000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr3:17524200-17530200	Weak transcription	Fetal Brain Female	brain
37	chr3:17524400-17528600	Weak transcription	A549	lung
38	chr3:17525400-17526200	Enhancers	H1 Cell Line	embryonic stem cell

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