Variant report

Variant	rs9310527
Chromosome Location	chr3:17661762-17661763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9310528	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9310527	LSM3	cis	parietal	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:17639200-17676800	Weak transcription	Ovary	ovary
6	chr3:17641400-17663000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:17647000-17670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:17647400-17673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:17647800-17663200	Weak transcription	A549	lung
10	chr3:17647800-17673000	Weak transcription	Psoas Muscle	Psoas
11	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
12	chr3:17651400-17673200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:17655600-17664600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:17657600-17663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:17657600-17667000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:17657600-17673200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:17657800-17668200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:17657800-17681200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:17658000-17665400	Weak transcription	Fetal Lung	lung
21	chr3:17658000-17667800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:17658000-17669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:17658200-17668400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:17658400-17665000	Weak transcription	Thymus	Thymus
25	chr3:17658400-17665800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:17658400-17668000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:17658600-17663200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:17658600-17664800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:17658600-17667600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:17658800-17677200	Weak transcription	Small Intestine	intestine
31	chr3:17659000-17661800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:17659000-17663400	Weak transcription	Primary T cells from cord blood	blood
33	chr3:17659000-17665000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:17659400-17664200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:17659400-17676800	Weak transcription	Right Atrium	heart
36	chr3:17659800-17661800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:17659800-17662000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:17659800-17672800	Weak transcription	Fetal Heart	heart
39	chr3:17660200-17668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:17660400-17663000	Weak transcription	Liver	Liver
41	chr3:17660400-17663600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:17660400-17663600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:17660400-17665000	Weak transcription	Esophagus	oesophagus
44	chr3:17660400-17665400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:17660400-17665400	Weak transcription	Placenta	Placenta
46	chr3:17660400-17665600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:17660400-17665800	Weak transcription	Fetal Thymus	thymus
48	chr3:17660400-17666600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:17660400-17666800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:17660400-17667200	Weak transcription	Spleen	Spleen

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