Variant report

Variant	rs11929046
Chromosome Location	chr3:17821010-17821011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17820757..17821702-chr3:17882495..17883376,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs11128860	0.85[AMR][1000 genomes]
rs11128861	0.85[AMR][1000 genomes]
rs11128862	0.85[AMR][1000 genomes]
rs11128863	0.85[AMR][1000 genomes]
rs11128864	0.85[AMR][1000 genomes]
rs11128867	0.85[AMR][1000 genomes]
rs11128868	0.85[AMR][1000 genomes]
rs11128870	0.85[AMR][1000 genomes]
rs11916141	0.85[AMR][1000 genomes]
rs11916424	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11922861	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11924147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924560	1.00[EUR][1000 genomes]
rs11925066	0.85[AMR][1000 genomes]
rs11925226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925353	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11926072	1.00[EUR][1000 genomes]
rs11926087	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926251	1.00[EUR][1000 genomes]
rs11927283	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11927436	0.85[AMR][1000 genomes]
rs11927611	0.85[AMR][1000 genomes]
rs11927769	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11927967	1.00[EUR][1000 genomes]
rs11929521	1.00[EUR][1000 genomes]
rs12107061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107652	0.85[AMR][1000 genomes]
rs17044038	0.85[AMR][1000 genomes]
rs17044041	0.85[AMR][1000 genomes]
rs17044050	0.85[AMR][1000 genomes]
rs17044053	0.85[AMR][1000 genomes]
rs17044054	0.85[AMR][1000 genomes]
rs28456004	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28525383	1.00[EUR][1000 genomes]
rs56726310	0.85[AMR][1000 genomes]
rs56777792	0.85[AMR][1000 genomes]
rs57352109	1.00[EUR][1000 genomes]
rs57816103	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58042633	0.85[AMR][1000 genomes]
rs58152540	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58280814	0.85[AMR][1000 genomes]
rs58392667	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58848058	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58921548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59891221	1.00[EUR][1000 genomes]
rs59960076	1.00[EUR][1000 genomes]
rs60245392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60459720	1.00[EUR][1000 genomes]
rs60662240	1.00[EUR][1000 genomes]
rs60744506	0.85[AMR][1000 genomes]
rs60803166	1.00[EUR][1000 genomes]
rs60838916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61601581	0.85[AMR][1000 genomes]
rs61650046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61698855	1.00[EUR][1000 genomes]
rs6577595	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6577629	1.00[EUR][1000 genomes]
rs6763348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772619	0.85[AMR][1000 genomes]
rs6777064	1.00[AMR][1000 genomes]
rs6780341	0.85[AMR][1000 genomes]
rs6785982	0.85[AMR][1000 genomes]
rs6786472	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6793958	0.85[AMR][1000 genomes]
rs6794148	0.85[AMR][1000 genomes]
rs6796915	1.00[EUR][1000 genomes]
rs73160959	1.00[EUR][1000 genomes]
rs73160964	1.00[EUR][1000 genomes]
rs73164768	1.00[EUR][1000 genomes]
rs73164787	1.00[EUR][1000 genomes]
rs73164796	1.00[EUR][1000 genomes]
rs73165722	1.00[EUR][1000 genomes]
rs73165736	1.00[EUR][1000 genomes]
rs73165740	1.00[EUR][1000 genomes]
rs73165743	1.00[EUR][1000 genomes]
rs73165752	1.00[EUR][1000 genomes]
rs73165771	1.00[EUR][1000 genomes]
rs73165774	1.00[EUR][1000 genomes]
rs73165775	1.00[EUR][1000 genomes]
rs73165777	1.00[EUR][1000 genomes]
rs73165779	1.00[EUR][1000 genomes]
rs73165798	1.00[EUR][1000 genomes]
rs73166516	1.00[EUR][1000 genomes]
rs73166544	1.00[EUR][1000 genomes]
rs73167510	1.00[EUR][1000 genomes]
rs73167513	1.00[EUR][1000 genomes]
rs73167514	1.00[EUR][1000 genomes]
rs73167523	1.00[EUR][1000 genomes]
rs73167527	1.00[EUR][1000 genomes]
rs73168748	1.00[EUR][1000 genomes]
rs73168749	0.85[AMR][1000 genomes]
rs73168752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73168756	0.85[AMR][1000 genomes]
rs73168763	0.85[AMR][1000 genomes]
rs73168777	0.85[AMR][1000 genomes]
rs73170844	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170845	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170855	1.00[EUR][1000 genomes]
rs73170858	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170877	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73170878	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73172909	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73172914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73172924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620585	1.00[EUR][1000 genomes]
rs7630381	1.00[EUR][1000 genomes]
rs7631803	1.00[EUR][1000 genomes]
rs7648122	1.00[EUR][1000 genomes]
rs9754654	1.00[EUR][1000 genomes]
rs9754657	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9941993	1.00[EUR][1000 genomes]
rs9968236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17816400-17823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:17817200-17821200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:17819600-17821800	Enhancers	Dnd41	blood
4	chr3:17820800-17821800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:17820800-17822200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:17821000-17821400	Bivalent Enhancer	Fetal Thymus	thymus
7	chr3:17821000-17822200	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:17821000-17822800	Enhancers	Primary monocytes fromperipheralblood	blood

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