Variant report

Variant	rs11925034
Chromosome Location	chr3:17851366-17851367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11925145	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1430898	1.00[AFR][1000 genomes]
rs17043883	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs17200930	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17850200-17851800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:17850200-17852400	Enhancers	Fetal Heart	heart
3	chr3:17850200-17853200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:17850400-17851400	Enhancers	Left Ventricle	heart
5	chr3:17850400-17851400	Enhancers	Pancreas	Pancrea
6	chr3:17850400-17852200	Enhancers	K562	blood
7	chr3:17850400-17853000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:17850400-17853000	Enhancers	NH-A	brain
9	chr3:17850400-17853200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:17850400-17853200	Enhancers	NHDF-Ad	bronchial
11	chr3:17850400-17853200	Enhancers	Osteobl	bone
12	chr3:17850400-17853600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:17850600-17851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:17850600-17851400	Enhancers	Right Atrium	heart
15	chr3:17850600-17852200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:17850800-17852200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:17851000-17851400	Enhancers	Placenta	Placenta
18	chr3:17851000-17853000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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