Variant report

Variant	rs11129025
Chromosome Location	chr3:21872193-21872194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11710449	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487689	0.88[EUR][1000 genomes]
rs12491043	0.88[EUR][1000 genomes]
rs12494052	0.88[EUR][1000 genomes]
rs28591160	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843879	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3860587	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9810237	0.97[EUR][1000 genomes]
rs9821836	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822325	0.91[EUR][1000 genomes]
rs9822486	0.91[EUR][1000 genomes]
rs9836784	0.91[ASN][1000 genomes]
rs9838038	0.91[EUR][1000 genomes]
rs9843819	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9855717	0.91[EUR][1000 genomes]
rs9860503	0.91[ASN][1000 genomes]
rs9861628	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv470494	chr3:21839871-21872193	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21868200-21872200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:21871600-21873200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:21871800-21872400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:21871800-21872400	Enhancers	Fetal Lung	lung
5	chr3:21872000-21873200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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