Variant report

Variant	rs11129067
Chromosome Location	chr3:22474494-22474495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10510529	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs11129059	0.92[CHD][hapmap];0.92[JPT][hapmap]
rs11129066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11709549	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11710808	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs11711745	0.85[JPT][hapmap]
rs11716879	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs3749374	0.88[MEX][hapmap]
rs7614013	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7616332	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7616503	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7619731	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs7624127	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9811913	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9844836	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9844916	0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9844956	0.81[EUR][1000 genomes]
rs9845154	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9845451	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9845488	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9861611	0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs9876850	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9882628	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9882764	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876623	chr3:22473729-22571896	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11129067	APP	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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