Variant report

Variant	rs9861611
Chromosome Location	chr3:22473092-22473093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510529	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap]
rs11129059	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs11129066	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11129067	0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap]
rs11710808	0.84[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap]
rs11711745	0.83[CEU][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11716879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12639237	0.90[CHB][hapmap]
rs7614013	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7616332	0.92[JPT][hapmap]
rs7616503	0.92[JPT][hapmap]
rs7619731	0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap]
rs7624127	0.92[JPT][hapmap]
rs9811913	1.00[JPT][hapmap]
rs9844916	0.90[JPT][hapmap]
rs9852024	0.92[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22473000-22473400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:22473000-22473600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links