Variant report

Variant	rs11129198
Chromosome Location	chr3:25426975-25426976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11711018	0.82[ASN][1000 genomes]
rs12374126	0.84[ASN][1000 genomes]
rs12374188	0.82[ASN][1000 genomes]
rs1384901	0.83[ASN][1000 genomes]
rs17016187	0.86[CHD][hapmap]
rs2291296	0.95[EUR][1000 genomes]
rs34075235	0.98[EUR][1000 genomes]
rs9877461	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11129198	SLC4A7	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25418400-25427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25422000-25427000	Weak transcription	Placenta	Placenta
3	chr3:25423000-25427400	Weak transcription	Fetal Kidney	kidney
4	chr3:25423400-25427000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:25426600-25427800	Enhancers	Brain Anterior Caudate	brain
6	chr3:25426800-25427800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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