Variant report

Variant	rs11130791
Chromosome Location	chr3:60874077-60874078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10510855	0.86[ASW][hapmap]
rs11130789	0.86[CEU][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap]
rs11130790	0.86[CEU][hapmap]
rs12629814	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1447919	0.91[TSI][hapmap]
rs1562521	0.86[ASW][hapmap];0.86[GIH][hapmap];0.82[MKK][hapmap];0.80[TSI][hapmap]
rs2121845	0.85[YRI][hapmap]
rs2594135	0.91[TSI][hapmap]
rs2736754	0.86[TSI][hapmap]
rs2736755	0.86[TSI][hapmap]
rs4974235	0.86[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11130791	ACOX2	cis	parietal	SCAN
rs11130791	DNAH12	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60871400-60876000	Weak transcription	Pancreas	Pancrea
2	chr3:60872600-60879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:60872800-60876000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:60874000-60874400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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