Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11130789	0.80[GIH][hapmap]
rs11130791	0.86[ASW][hapmap];0.86[GIH][hapmap];0.82[MKK][hapmap];0.80[TSI][hapmap]
rs11130792	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706057	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706094	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13097786	0.82[CHB][hapmap]
rs1447917	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35353184	0.92[ASN][1000 genomes]
rs6446159	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6763967	0.92[ASN][1000 genomes]
rs6764919	0.97[ASN][1000 genomes]
rs6765028	0.82[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs6785481	0.94[ASN][1000 genomes]
rs6804218	0.92[ASN][1000 genomes]
rs7630291	1.00[CHD][hapmap]
rs7640419	1.00[CHD][hapmap]
rs9819641	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9826649	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9827069	0.82[CHB][hapmap]
rs9847513	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1562521	DNAH12	cis	cerebellum	SCAN
rs1562521	DNAH12	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60879200-60880000	Enhancers	Dnd41	blood
2	chr3:60879400-60880200	Enhancers	Primary T cells from cord blood	blood
3	chr3:60879400-60880200	Enhancers	Thymus	Thymus
4	chr3:60879600-60880600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:60879600-60882000	Enhancers	HUES64 Cell Line	embryonic stem cell

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