Variant report
| Variant | rs11706057 |
|---|---|
| Chromosome Location | chr3:60882123-60882124 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11130792 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11706094 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13097786 | 0.84[ASN][1000 genomes] |
| rs1447916 | 0.96[AFR][1000 genomes] |
| rs1447917 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1562521 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35353184 | 0.97[ASN][1000 genomes] |
| rs35673396 | 0.84[ASN][1000 genomes] |
| rs6763967 | 0.97[ASN][1000 genomes] |
| rs6764919 | 0.97[ASN][1000 genomes] |
| rs6765028 | 0.89[ASN][1000 genomes] |
| rs6785481 | 1.00[ASN][1000 genomes] |
| rs6804218 | 0.97[ASN][1000 genomes] |
| rs7611169 | 0.80[ASN][1000 genomes] |
| rs7630291 | 0.82[ASN][1000 genomes] |
| rs7640419 | 0.82[ASN][1000 genomes] |
| rs9819641 | 0.92[ASN][1000 genomes] |
| rs9826649 | 0.97[ASN][1000 genomes] |
| rs9827069 | 0.84[ASN][1000 genomes] |
| rs9847513 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9875651 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534038 | chr3:60781917-60993082 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2757872 | chr3:60781943-61019003 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2759152 | chr3:60781943-61220809 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:60881800-60884000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
