Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11130798	0.82[EUR][1000 genomes]
rs11706057	0.80[ASN][1000 genomes]
rs11706094	0.80[ASN][1000 genomes]
rs11926529	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13097786	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35353184	0.83[ASN][1000 genomes]
rs35673396	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4508731	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6763967	0.83[ASN][1000 genomes]
rs6765028	0.85[ASN][1000 genomes]
rs6785481	0.80[ASN][1000 genomes]
rs6804218	0.83[ASN][1000 genomes]
rs7356063	0.80[EUR][1000 genomes]
rs7630291	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7634868	0.81[EUR][1000 genomes]
rs7640419	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9808931	0.83[EUR][1000 genomes]
rs9819641	0.83[ASN][1000 genomes]
rs9826649	0.83[ASN][1000 genomes]
rs9827069	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853958	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9875651	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990003	0.81[EUR][1000 genomes]
rs9990004	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60909800-60913000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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