Variant report

Variant	rs11130807
Chromosome Location	chr3:61016039-61016040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61010096..61013094-chr3:61013770..61016716,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13061562	0.83[ASW][hapmap]
rs13068378	0.83[ASW][hapmap]
rs13087596	0.91[ASW][hapmap]
rs1371091	0.86[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1898748	0.84[TSI][hapmap]
rs1898750	0.84[CHD][hapmap]
rs1898751	0.83[ASN][1000 genomes]
rs2118809	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs4688142	0.86[CEU][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6446174	0.83[JPT][hapmap]
rs6446175	0.81[JPT][hapmap]
rs6446179	0.84[TSI][hapmap]
rs6773775	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs6804627	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs7374239	0.81[JPT][hapmap]
rs7648908	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs9816492	0.81[JPT][hapmap]
rs9832173	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs9840822	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs9842587	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2752012	chr3:60952040-61016039	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590409	chr3:60952040-61040860	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv34680	chr3:60983280-61052979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2756992	chr3:60993915-61052642	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv876865	chr3:60996220-61046955	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61012200-61016200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:61013600-61018800	Enhancers	HepG2	liver
3	chr3:61014200-61026400	Weak transcription	Psoas Muscle	Psoas
4	chr3:61015400-61019400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:61015600-61016800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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