Variant report

Variant	rs7648908
Chromosome Location	chr3:60989745-60989746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11130807	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1371091	0.84[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1439002	0.89[ASN][1000 genomes]
rs1439003	0.89[ASN][1000 genomes]
rs1898750	0.84[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];0.80[ASN][1000 genomes]
rs1898751	0.84[ASN][1000 genomes]
rs2118809	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs4515043	0.94[ASN][1000 genomes]
rs4688142	0.94[CHD][hapmap];0.81[JPT][hapmap]
rs59318168	0.91[ASN][1000 genomes]
rs61686981	0.88[ASN][1000 genomes]
rs6446173	0.89[ASN][1000 genomes]
rs6446174	0.94[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6446175	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6773775	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs6804627	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs7374239	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs9816492	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs9832173	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap]
rs9840822	0.84[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs9842587	0.88[CHB][hapmap];0.80[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2752012	chr3:60952040-61016039	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590409	chr3:60952040-61040860	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv34680	chr3:60983280-61052979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1812798	chr3:60984540-60996220	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7648908	DNAH12	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60978400-60997600	Weak transcription	Pancreas	Pancrea
2	chr3:60988800-60992600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:60988800-60993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:60989000-60993200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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