Variant report

Variant	rs11131356
Chromosome Location	chr4:62946312-62946313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10009372	0.81[ASN][1000 genomes]
rs10027730	0.86[ASN][1000 genomes]
rs12507188	0.81[ASN][1000 genomes]
rs13121574	0.84[ASN][1000 genomes]
rs17226468	0.80[EUR][1000 genomes]
rs2287146	1.00[ASN][1000 genomes]
rs7697748	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62943400-62950800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62943600-62946400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:62945800-62946800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:62945800-62947000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:62945800-62947400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:62946000-62946800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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