Variant report

Variant	rs10027730
Chromosome Location	chr4:62995033-62995034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10009372	0.95[ASN][1000 genomes]
rs11131355	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap]
rs11131356	0.86[ASN][1000 genomes]
rs12507188	0.95[ASN][1000 genomes]
rs13121574	0.89[ASN][1000 genomes]
rs17226468	0.85[ASN][1000 genomes]
rs1990690	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1990691	0.93[ASN][1000 genomes]
rs2216197	0.84[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs2287146	0.86[ASN][1000 genomes]
rs6821297	0.90[CEU][hapmap];0.92[TSI][hapmap]
rs6827497	0.82[ASN][1000 genomes]
rs6843474	0.82[YRI][hapmap]
rs7697748	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv594332	chr4:62976756-63034074	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1005620	chr4:62978115-63035387	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62992400-62995800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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