Variant report
Variant | rs2216197 |
---|---|
Chromosome Location | chr4:62976756-62976757 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10008066 | 0.90[EUR][1000 genomes] |
rs10009372 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10027730 | 0.86[ASN][1000 genomes] |
rs10033607 | 0.92[EUR][1000 genomes] |
rs11131356 | 0.89[ASN][1000 genomes] |
rs11930426 | 0.92[EUR][1000 genomes] |
rs11944228 | 0.92[EUR][1000 genomes] |
rs12500654 | 0.92[EUR][1000 genomes] |
rs12507188 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12511066 | 0.86[EUR][1000 genomes] |
rs13121574 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1990690 | 1.00[CEU][hapmap];0.94[CHB][hapmap] |
rs1990691 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2216195 | 0.91[EUR][1000 genomes] |
rs2287146 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs28615650 | 0.86[EUR][1000 genomes] |
rs28661220 | 0.86[EUR][1000 genomes] |
rs28819240 | 0.92[EUR][1000 genomes] |
rs4277807 | 0.86[EUR][1000 genomes] |
rs4282218 | 0.87[EUR][1000 genomes] |
rs4860451 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6551676 | 0.92[EUR][1000 genomes] |
rs6551680 | 0.90[EUR][1000 genomes] |
rs6551681 | 0.90[EUR][1000 genomes] |
rs6551683 | 0.94[CEU][hapmap] |
rs6810664 | 0.91[EUR][1000 genomes] |
rs6827497 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6833025 | 0.92[EUR][1000 genomes] |
rs6836463 | 0.86[EUR][1000 genomes] |
rs6848354 | 0.92[EUR][1000 genomes] |
rs6857895 | 0.92[EUR][1000 genomes] |
rs7657624 | 0.83[EUR][1000 genomes] |
rs7662331 | 0.89[EUR][1000 genomes] |
rs7664142 | 0.86[EUR][1000 genomes] |
rs7671439 | 0.86[EUR][1000 genomes] |
rs7677634 | 0.90[EUR][1000 genomes] |
rs7682584 | 0.90[EUR][1000 genomes] |
rs7692875 | 0.87[EUR][1000 genomes] |
rs7695511 | 0.86[EUR][1000 genomes] |
rs7697748 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs950313 | 0.91[EUR][1000 genomes] |
rs9995712 | 0.86[EUR][1000 genomes] |
rs9999509 | 0.92[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv879078 | chr4:62923797-63054757 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
2 | nsv966272 | chr4:62969506-62980661 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
3 | nsv594332 | chr4:62976756-63034074 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |