Variant report

Variant	rs11133467
Chromosome Location	chr4:57724053-57724054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12510105	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12642813	0.99[ASN][1000 genomes]
rs13144185	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35951745	0.83[AFR][1000 genomes]
rs59450267	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6554389	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6554390	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67989943	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6858479	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57722000-57725000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:57722800-57724600	Enhancers	Adipose Nuclei	Adipose
3	chr4:57722800-57725000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:57723400-57724600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:57723400-57724600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:57723400-57725000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:57723400-57727400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:57723400-57727600	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:57723600-57725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:57723800-57725000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:57723800-57725200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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