Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10866440	0.81[JPT][hapmap]
rs10866441	0.81[JPT][hapmap]
rs1105434	0.80[JPT][hapmap]
rs1107675	0.81[JPT][hapmap]
rs11133467	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11730321	0.81[CHD][hapmap]
rs11932673	0.81[JPT][hapmap]
rs12500454	0.81[JPT][hapmap]
rs12510105	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642813	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1277287	0.81[JPT][hapmap]
rs13108245	0.80[JPT][hapmap]
rs13144185	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1625691	0.81[JPT][hapmap]
rs17081937	0.81[JPT][hapmap]
rs17087317	0.81[JPT][hapmap]
rs17087411	0.81[JPT][hapmap]
rs17087414	0.81[JPT][hapmap];0.80[MEX][hapmap]
rs1718839	0.81[JPT][hapmap]
rs1877669	0.81[JPT][hapmap]
rs2228991	0.81[JPT][hapmap]
rs3000	0.81[JPT][hapmap]
rs3796528	0.81[JPT][hapmap]
rs3806745	0.81[JPT][hapmap]
rs59450267	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554398	0.81[JPT][hapmap]
rs67989943	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6838948	0.81[JPT][hapmap]
rs6852110	0.86[JPT][hapmap]
rs6858479	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661194	0.81[JPT][hapmap]
rs7680734	0.81[JPT][hapmap]
rs781666	0.81[JPT][hapmap]
rs781668	0.81[JPT][hapmap]
rs9942208	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57707600-57709400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:57707600-57709600	Weak transcription	Adipose Nuclei	Adipose
3	chr4:57707600-57709600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:57708400-57709400	Enhancers	HUES6 Cell Line	embryonic stem cell

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