Variant report

Variant	rs11135361
Chromosome Location	chr5:164657996-164657997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13165528	0.83[AFR][1000 genomes]
rs1433004	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs6556813	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs885477	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164656400-164658000	Enhancers	Primary hematopoietic stem cells	blood
2	chr5:164656600-164658200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:164656600-164658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:164656600-164658600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:164656600-164658800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:164656800-164658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:164656800-164658200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:164657400-164659200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:164657800-164659400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:164657800-164660200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:164657800-164660600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:164657800-164660600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:164657800-164660800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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