Variant report

Variant	rs13165528
Chromosome Location	chr5:164655628-164655629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10078215	0.82[EUR][1000 genomes]
rs10515891	0.82[EUR][1000 genomes]
rs11135353	0.82[EUR][1000 genomes]
rs11135354	0.82[EUR][1000 genomes]
rs11135356	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135357	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135360	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11135361	0.83[AFR][1000 genomes]
rs12519113	0.81[AFR][1000 genomes]
rs12519127	0.83[AFR][1000 genomes]
rs13156646	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13162946	0.81[EUR][1000 genomes]
rs1363117	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1421701	0.83[EUR][1000 genomes]
rs1421713	0.83[EUR][1000 genomes]
rs1433004	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34405444	0.82[EUR][1000 genomes]
rs4323250	0.80[EUR][1000 genomes]
rs4431365	0.80[EUR][1000 genomes]
rs4577712	0.81[EUR][1000 genomes]
rs4868916	0.90[ASN][1000 genomes]
rs4868917	0.91[ASN][1000 genomes]
rs6556809	0.82[EUR][1000 genomes]
rs6556813	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6870031	0.83[EUR][1000 genomes]
rs6876275	0.82[EUR][1000 genomes]
rs6895570	0.80[EUR][1000 genomes]
rs7447491	0.82[EUR][1000 genomes]
rs7701554	0.82[EUR][1000 genomes]
rs7736590	0.82[EUR][1000 genomes]
rs885477	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164654600-164656800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:164655000-164656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:164655000-164656600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:164655000-164656800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:164655000-164657400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:164655200-164655800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:164655400-164656400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:164655600-164656000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:164655600-164656600	Enhancers	Pancreatic Islets	Pancreatic Islet

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