Variant report

Variant	rs11138263
Chromosome Location	chr9:71962715-71962716
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71938497..71941433-chr9:71956762..71962911,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135063	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11138090	1.00[EUR][1000 genomes]
rs11138097	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11138118	1.00[EUR][1000 genomes]
rs11138262	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11138400	1.00[EUR][1000 genomes]
rs11138419	1.00[EUR][1000 genomes]
rs12341853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343852	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13440045	1.00[EUR][1000 genomes]
rs1890633	1.00[EUR][1000 genomes]
rs41277901	1.00[EUR][1000 genomes]
rs45534236	1.00[EUR][1000 genomes]
rs6559512	0.88[YRI][hapmap]
rs7018704	1.00[EUR][1000 genomes]
rs73450886	1.00[EUR][1000 genomes]
rs73450889	1.00[EUR][1000 genomes]
rs73450890	1.00[EUR][1000 genomes]
rs73452911	1.00[EUR][1000 genomes]
rs73452916	1.00[EUR][1000 genomes]
rs73452956	1.00[EUR][1000 genomes]
rs7857529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71955400-71981800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:71961200-71963000	Enhancers	Fetal Heart	heart
3	chr9:71961600-71963200	Enhancers	HUVEC	blood vessel
4	chr9:71961800-71963000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:71962000-71963000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:71962000-71963200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:71962000-71963200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:71962200-71963200	Enhancers	Fetal Lung	lung
9	chr9:71962200-71963200	Enhancers	Ovary	ovary
10	chr9:71962200-71994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:71962400-71962800	Enhancers	Fetal Kidney	kidney
12	chr9:71962400-71963000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:71962400-71965200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:71962400-71970400	Weak transcription	Right Ventricle	heart
15	chr9:71962400-71970600	Weak transcription	Left Ventricle	heart
16	chr9:71962400-71978000	Weak transcription	Gastric	stomach
17	chr9:71962600-71963000	Weak transcription	Pancreas	Pancrea
18	chr9:71962600-71970600	Weak transcription	Psoas Muscle	Psoas

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