Variant report

Variant	rs1890633
Chromosome Location	chr9:71880307-71880308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11138090	1.00[EUR][1000 genomes]
rs11138097	1.00[EUR][1000 genomes]
rs11138118	1.00[EUR][1000 genomes]
rs11138262	1.00[EUR][1000 genomes]
rs11138263	1.00[EUR][1000 genomes]
rs11138400	1.00[EUR][1000 genomes]
rs11138419	1.00[EUR][1000 genomes]
rs12341853	1.00[EUR][1000 genomes]
rs12343852	1.00[EUR][1000 genomes]
rs13440045	1.00[EUR][1000 genomes]
rs41277901	1.00[EUR][1000 genomes]
rs45534236	1.00[EUR][1000 genomes]
rs7018704	1.00[EUR][1000 genomes]
rs73450886	1.00[EUR][1000 genomes]
rs73450889	1.00[EUR][1000 genomes]
rs73450890	1.00[EUR][1000 genomes]
rs73452911	1.00[EUR][1000 genomes]
rs73452916	1.00[EUR][1000 genomes]
rs73452956	1.00[EUR][1000 genomes]
rs7857529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71864600-71880800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:71864800-71880800	Weak transcription	NHDF-Ad	bronchial
3	chr9:71866400-71881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:71869400-71887200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:71869600-71881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:71869600-71881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:71869800-71881000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:71869800-71883000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:71871800-71880600	Weak transcription	Stomach Mucosa	stomach
10	chr9:71871800-71881000	Weak transcription	HUVEC	blood vessel
11	chr9:71872000-71880800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:71872000-71880800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:71872200-71880600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:71872200-71881000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:71872400-71883600	Weak transcription	Lung	lung
16	chr9:71872600-71881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:71872800-71880600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:71873000-71888400	Weak transcription	Right Atrium	heart
19	chr9:71879400-71881200	Enhancers	Gastric	stomach
20	chr9:71879600-71881000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:71879600-71881000	Enhancers	Fetal Heart	heart
22	chr9:71879600-71881600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr9:71879800-71888400	Weak transcription	Left Ventricle	heart
24	chr9:71880200-71880400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:71880200-71881000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:71880200-71881200	Enhancers	Osteobl	bone

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