Variant report

Variant	rs11139604
Chromosome Location	chr9:85155955-85155956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10867849	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867852	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139608	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139610	0.82[AMR][1000 genomes]
rs12238509	0.82[AMR][1000 genomes]
rs17085564	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4472597	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85150600-85161000	Weak transcription	Fetal Lung	lung
2	chr9:85155600-85156200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:85155800-85158200	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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