Variant report

Variant	rs11139666
Chromosome Location	chr9:85262806-85262807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10115045	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867860	0.86[ASN][1000 genomes]
rs10867861	0.96[ASN][1000 genomes]
rs11139635	0.83[ASN][1000 genomes]
rs11139644	0.98[ASN][1000 genomes]
rs11139648	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139649	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12176645	0.83[ASN][1000 genomes]
rs1332463	0.90[ASN][1000 genomes]
rs17085679	0.91[ASN][1000 genomes]
rs66818511	0.86[AFR][1000 genomes]
rs7025231	0.85[ASN][1000 genomes]
rs7870337	0.83[ASN][1000 genomes]
rs871771	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85259800-85263200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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