Variant report

Variant	rs11139649
Chromosome Location	chr9:85216270-85216271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85207122..85209634-chr9:85214499..85216722,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10115045	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10867860	0.88[ASN][1000 genomes]
rs10867861	0.99[ASN][1000 genomes]
rs11139635	0.86[ASN][1000 genomes]
rs11139644	0.99[ASN][1000 genomes]
rs11139648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139650	0.80[AFR][1000 genomes]
rs11139652	0.81[AFR][1000 genomes]
rs11139653	0.81[AFR][1000 genomes]
rs11139654	0.81[AFR][1000 genomes]
rs11139666	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12176645	0.86[ASN][1000 genomes]
rs1332463	0.93[ASN][1000 genomes]
rs17085679	0.88[ASN][1000 genomes]
rs7025231	0.88[ASN][1000 genomes]
rs73648460	0.80[AFR][1000 genomes]
rs7870337	0.86[ASN][1000 genomes]
rs871771	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:85211600-85216400	Enhancers	Fetal Intestine Small	intestine
3	chr9:85212200-85216600	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:85212200-85217200	Enhancers	Colon Smooth Muscle	Colon
5	chr9:85212200-85217400	Enhancers	Fetal Stomach	stomach
6	chr9:85213000-85216600	Enhancers	Liver	Liver
7	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:85214000-85216800	Enhancers	Fetal Kidney	kidney
9	chr9:85214400-85216600	Enhancers	Fetal Intestine Large	intestine
10	chr9:85214600-85216400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:85214600-85216400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:85215400-85216400	Enhancers	Pancreas	Pancrea
13	chr9:85215400-85216400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:85215400-85216600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:85215600-85216600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr9:85215600-85217200	Enhancers	Fetal Heart	heart
17	chr9:85215800-85216800	Flanking Active TSS	HepG2	liver
18	chr9:85216000-85219600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:85216000-85220600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:85216200-85216400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:85216200-85216400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr9:85216200-85217600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:85216200-85219600	Weak transcription	Fetal Lung	lung
24	chr9:85216200-85220800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links