Variant report

Variant	rs11139654
Chromosome Location	chr9:85220698-85220699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10122746	0.84[EUR][1000 genomes]
rs10512132	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512133	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867862	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139640	0.96[EUR][1000 genomes]
rs11139646	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139648	0.81[AFR][1000 genomes]
rs11139649	0.81[AFR][1000 genomes]
rs11139650	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139665	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139680	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139682	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139683	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139723	0.90[GIH][hapmap]
rs1571905	0.80[ASN][1000 genomes]
rs17085592	0.93[EUR][1000 genomes]
rs17085704	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2001818	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648462	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650741	0.96[EUR][1000 genomes]
rs7853040	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853471	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875519	0.93[EUR][1000 genomes]
rs7875637	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:85216200-85220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:85217200-85221200	Weak transcription	Fetal Heart	heart
4	chr9:85219600-85220800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:85219600-85220800	Enhancers	Fetal Intestine Small	intestine
6	chr9:85219600-85221200	Enhancers	Fetal Stomach	stomach
7	chr9:85219600-85221400	Enhancers	Colon Smooth Muscle	Colon
8	chr9:85219600-85221400	Enhancers	Fetal Intestine Large	intestine
9	chr9:85219600-85221800	Enhancers	Liver	Liver
10	chr9:85219600-85221800	Enhancers	Fetal Kidney	kidney
11	chr9:85219600-85222000	Enhancers	Fetal Lung	lung
12	chr9:85220000-85221200	Enhancers	Rectal Smooth Muscle	rectum
13	chr9:85220200-85221600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:85220400-85220800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:85220400-85220800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85220400-85221200	Enhancers	Pancreas	Pancrea
17	chr9:85220600-85220800	Flanking Active TSS	HepG2	liver
18	chr9:85220600-85221000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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