Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85207122..85209634-chr9:85214499..85216722,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10122746	0.87[EUR][1000 genomes]
rs10512132	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512133	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867862	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139640	1.00[EUR][1000 genomes]
rs11139650	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139653	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139654	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139661	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139665	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139680	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139682	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139683	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1571905	0.80[ASN][1000 genomes]
rs17085592	0.96[EUR][1000 genomes]
rs17085704	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2001818	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648460	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648462	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648463	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650741	1.00[EUR][1000 genomes]
rs7853040	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853471	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875519	0.96[EUR][1000 genomes]
rs7875637	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
2	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:85211600-85216400	Enhancers	Fetal Intestine Small	intestine
4	chr9:85212200-85216600	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:85212200-85217200	Enhancers	Colon Smooth Muscle	Colon
6	chr9:85212200-85217400	Enhancers	Fetal Stomach	stomach
7	chr9:85212600-85215200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:85213000-85216600	Enhancers	Liver	Liver
9	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:85213800-85215200	Flanking Active TSS	HepG2	liver
11	chr9:85213800-85215400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:85213800-85215800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:85214000-85215600	Weak transcription	Fetal Lung	lung
14	chr9:85214000-85216800	Enhancers	Fetal Kidney	kidney
15	chr9:85214400-85215800	Enhancers	Stomach Smooth Muscle	stomach
16	chr9:85214400-85216600	Enhancers	Fetal Intestine Large	intestine
17	chr9:85214600-85215400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:85214600-85216000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:85214600-85216400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr9:85214600-85216400	Enhancers	Fetal Muscle Leg	muscle

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