Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10122746	0.84[EUR][1000 genomes]
rs10512132	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10512133	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867862	0.92[ASN][1000 genomes]
rs11139640	0.96[EUR][1000 genomes]
rs11139646	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139650	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139652	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139653	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139654	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139661	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139680	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139682	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139683	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139723	0.90[GIH][hapmap]
rs1571905	0.82[ASN][1000 genomes]
rs17085592	0.93[EUR][1000 genomes]
rs17085704	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2001818	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73648460	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73648462	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73648463	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73650741	0.96[EUR][1000 genomes]
rs7853040	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853471	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7875519	1.00[EUR][1000 genomes]
rs7875637	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85259800-85263200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:85260000-85261600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:85260600-85261400	Enhancers	Thymus	Thymus
4	chr9:85260600-85261600	Enhancers	Fetal Thymus	thymus
5	chr9:85261000-85261600	Enhancers	Dnd41	blood

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