Variant report

Variant	rs17085592
Chromosome Location	chr9:85179857-85179858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10122746	0.84[EUR][1000 genomes]
rs10512132	0.83[EUR][1000 genomes]
rs10512133	0.86[EUR][1000 genomes]
rs11139640	0.96[EUR][1000 genomes]
rs11139646	0.96[EUR][1000 genomes]
rs11139650	0.93[EUR][1000 genomes]
rs11139652	0.87[EUR][1000 genomes]
rs11139653	0.93[EUR][1000 genomes]
rs11139654	0.93[EUR][1000 genomes]
rs11139661	0.83[EUR][1000 genomes]
rs11139665	0.93[EUR][1000 genomes]
rs11139680	0.86[EUR][1000 genomes]
rs11139682	0.89[EUR][1000 genomes]
rs11139683	0.89[EUR][1000 genomes]
rs17085704	0.96[EUR][1000 genomes]
rs2001818	0.83[EUR][1000 genomes]
rs73648460	0.93[EUR][1000 genomes]
rs73648462	0.89[EUR][1000 genomes]
rs73648463	0.86[EUR][1000 genomes]
rs73650741	0.96[EUR][1000 genomes]
rs7853040	0.86[EUR][1000 genomes]
rs7853471	0.86[EUR][1000 genomes]
rs7875519	0.93[EUR][1000 genomes]
rs7875637	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3341772	chr9:85176432-85180630	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85175000-85180200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:85176000-85180200	Weak transcription	Liver	Liver
3	chr9:85178800-85180400	Weak transcription	Fetal Lung	lung
4	chr9:85179000-85180200	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links