Variant report

Variant	rs1571905
Chromosome Location	chr9:85296585-85296586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10512132	0.80[ASN][1000 genomes]
rs11139646	0.80[ASN][1000 genomes]
rs11139650	0.80[ASN][1000 genomes]
rs11139652	0.80[ASN][1000 genomes]
rs11139653	0.80[ASN][1000 genomes]
rs11139654	0.80[ASN][1000 genomes]
rs11139665	0.82[ASN][1000 genomes]
rs11139680	0.95[ASN][1000 genomes]
rs11139682	0.93[ASN][1000 genomes]
rs11139683	0.93[ASN][1000 genomes]
rs11139686	0.86[AFR][1000 genomes]
rs11139700	0.89[ASN][1000 genomes]
rs17085704	1.00[ASN][1000 genomes]
rs2001818	0.80[ASN][1000 genomes]
rs73648460	0.80[ASN][1000 genomes]
rs73648462	0.80[ASN][1000 genomes]
rs73648463	0.80[ASN][1000 genomes]
rs7853040	0.80[ASN][1000 genomes]
rs7853471	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85293000-85297400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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