Variant report

Variant	rs11139700
Chromosome Location	chr9:85322432-85322433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11139680	0.84[ASN][1000 genomes]
rs11139682	0.87[ASN][1000 genomes]
rs11139683	0.87[ASN][1000 genomes]
rs11139723	0.90[GIH][hapmap]
rs1571905	0.89[ASN][1000 genomes]
rs17085704	0.89[ASN][1000 genomes]
rs62579104	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85321400-85322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr9:85321400-85322600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:85321600-85322600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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