Variant report

Variant	rs62579104
Chromosome Location	chr9:85325307-85325308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10491548	0.86[ASN][1000 genomes]
rs11139700	0.84[ASN][1000 genomes]
rs11139702	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11139703	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11139705	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12236312	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579110	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579111	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579112	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579113	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579114	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62579115	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579116	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62579117	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72737498	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85322600-85327400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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