Variant report

Variant	rs11140011
Chromosome Location	chr9:85913590-85913591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10117251	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10118491	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10780587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867978	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10867980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140007	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11140013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140014	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1323775	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1323776	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1359167	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1359168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1535750	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1535752	0.81[AMR][1000 genomes]
rs1535753	0.81[AMR][1000 genomes]
rs1886125	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1886126	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2209187	0.81[AMR][1000 genomes]
rs2209188	0.82[AMR][1000 genomes]
rs2378658	0.81[AMR][1000 genomes]
rs2378659	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3739658	0.81[AMR][1000 genomes]
rs4877251	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877752	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs942278	0.80[AMR][1000 genomes]
rs942279	0.80[AMR][1000 genomes]
rs942280	0.80[AMR][1000 genomes]
rs942282	0.81[AMR][1000 genomes]
rs942283	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85896000-85913600	Weak transcription	Psoas Muscle	Psoas
2	chr9:85896000-85919800	Weak transcription	Lung	lung
3	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
4	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:85897400-85914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
8	chr9:85906400-85915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:85906600-85919400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:85906800-85919600	Weak transcription	Pancreas	Pancrea
11	chr9:85908400-85913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:85909000-85914200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:85909000-85918400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:85909200-85928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:85910000-85913600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:85910400-85918000	Weak transcription	Fetal Brain Male	brain
17	chr9:85910600-85914000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:85910800-85914000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:85911400-85918800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:85911600-85914000	Strong transcription	Left Ventricle	heart
21	chr9:85912000-85913600	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:85912200-85915200	Enhancers	HUVEC	blood vessel
23	chr9:85912400-85913800	Strong transcription	HepG2	liver
24	chr9:85912600-85913600	Strong transcription	Gastric	stomach
25	chr9:85912600-85913600	Strong transcription	Ovary	ovary
26	chr9:85912600-85913800	Strong transcription	Adipose Nuclei	Adipose
27	chr9:85912600-85915200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:85912600-85919200	Weak transcription	Colonic Mucosa	Colon
29	chr9:85912800-85913800	Strong transcription	Fetal Brain Female	brain
30	chr9:85912800-85913800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:85912800-85913800	Strong transcription	Right Ventricle	heart
32	chr9:85913000-85913600	Strong transcription	Aorta	Aorta
33	chr9:85913000-85913600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr9:85913000-85913600	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr9:85913000-85913800	Strong transcription	Fetal Muscle Leg	muscle
36	chr9:85913000-85914200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr9:85913000-85915400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:85913200-85913800	Strong transcription	Fetal Intestine Small	intestine
39	chr9:85913400-85913800	Strong transcription	Brain Germinal Matrix	brain

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