Variant report

Variant	rs10867980
Chromosome Location	chr9:85915143-85915144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:55780966..55782713-chr9:85914150..85917090,2	MCF-7	breast:
2	chr9:85908596..85911105-chr9:85914154..85916205,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10117251	0.81[CEU][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10118491	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10780587	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867975	0.80[JPT][hapmap]
rs10867976	0.80[JPT][hapmap]
rs10867978	0.84[CEU][hapmap];0.84[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10867981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10867983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140007	0.87[CEU][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11140011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140013	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140014	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11140015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1323775	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1323776	0.88[CEU][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1359167	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359168	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535750	0.84[CEU][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535752	0.81[CHD][hapmap];0.81[AMR][1000 genomes]
rs1535753	0.82[MEX][hapmap];0.81[AMR][1000 genomes]
rs1886125	0.88[CEU][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1886126	0.87[CEU][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2209187	0.81[AMR][1000 genomes]
rs2209188	0.82[AMR][1000 genomes]
rs2378658	0.81[CHD][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes]
rs2378659	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3739658	0.81[AMR][1000 genomes]
rs4877251	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877751	0.82[MEX][hapmap]
rs4877752	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs942278	0.81[CHD][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes]
rs942279	0.80[AMR][1000 genomes]
rs942280	0.81[CHD][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes]
rs942282	0.81[AMR][1000 genomes]
rs942283	0.84[CHD][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85896000-85919800	Weak transcription	Lung	lung
2	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
3	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
6	chr9:85906600-85919400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:85906800-85919600	Weak transcription	Pancreas	Pancrea
8	chr9:85909000-85918400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:85909200-85928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:85910400-85918000	Weak transcription	Fetal Brain Male	brain
11	chr9:85911400-85918800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:85912200-85915200	Enhancers	HUVEC	blood vessel
13	chr9:85912600-85915200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:85912600-85919200	Weak transcription	Colonic Mucosa	Colon
15	chr9:85913000-85915400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:85913600-85915200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:85913600-85918800	Weak transcription	Ovary	ovary
18	chr9:85913600-85923000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:85913600-85932600	Weak transcription	Gastric	stomach
20	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
21	chr9:85913800-85915200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:85913800-85915400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:85913800-85915400	Weak transcription	Fetal Intestine Small	intestine
24	chr9:85913800-85917400	Weak transcription	Fetal Brain Female	brain
25	chr9:85913800-85918800	Weak transcription	Brain Germinal Matrix	brain
26	chr9:85913800-85919400	Weak transcription	Right Ventricle	heart
27	chr9:85913800-85936400	Weak transcription	HepG2	liver
28	chr9:85914000-85915200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:85914000-85915400	Enhancers	NHDF-Ad	bronchial
30	chr9:85914000-85915800	Weak transcription	Psoas Muscle	Psoas
31	chr9:85914000-85918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:85914000-85919600	Weak transcription	Left Ventricle	heart
33	chr9:85914000-85925000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:85914200-85915200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:85914200-85915400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr9:85914400-85915200	Enhancers	Primary hematopoietic stem cells	blood
38	chr9:85914400-85915200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:85914400-85915200	Enhancers	A549	lung
40	chr9:85914400-85915400	Enhancers	Fetal Muscle Leg	muscle
41	chr9:85914400-85915400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:85914400-85915400	Enhancers	Hela-S3	cervix
43	chr9:85914400-85915400	Enhancers	HSMMtube	muscle
44	chr9:85914600-85915200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:85914600-85915200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
46	chr9:85914600-85915200	Enhancers	Fetal Kidney	kidney
47	chr9:85914600-85918800	Weak transcription	Brain Anterior Caudate	brain
48	chr9:85914800-85915200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:85914800-85915200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:85914800-85919200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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