Variant report

Variant	rs10867976
Chromosome Location	chr9:85906284-85906285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10117251	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10118491	0.84[ASN][1000 genomes]
rs10780587	0.80[JPT][hapmap]
rs10867967	0.86[CHB][hapmap]
rs10867971	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10867973	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10867974	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10867975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867977	0.92[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10867978	0.81[CEU][hapmap]
rs10867980	0.80[JPT][hapmap]
rs10867981	0.80[JPT][hapmap]
rs10867982	0.81[JPT][hapmap]
rs11140004	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11140007	0.80[CEU][hapmap]
rs11140015	0.81[JPT][hapmap]
rs11795096	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1323775	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs1359167	0.80[JPT][hapmap]
rs1359168	0.80[JPT][hapmap]
rs1535750	0.80[CEU][hapmap]
rs1535752	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535753	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1544064	0.87[CHB][hapmap]
rs2209186	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2209187	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2209188	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378658	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2889953	0.81[CHB][hapmap]
rs2889954	0.83[JPT][hapmap]
rs3739658	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4418413	0.86[EUR][1000 genomes]
rs4877251	0.81[JPT][hapmap]
rs4877751	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7039712	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7039947	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs942279	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs942282	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs942283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85884200-85912400	Weak transcription	HepG2	liver
4	chr9:85895000-85912800	Weak transcription	Fetal Brain Female	brain
5	chr9:85896000-85913600	Weak transcription	Psoas Muscle	Psoas
6	chr9:85896000-85919800	Weak transcription	Lung	lung
7	chr9:85896400-85912600	Weak transcription	Gastric	stomach
8	chr9:85896400-85913400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:85896600-85913000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:85896800-85910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
12	chr9:85897000-85912600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:85897000-85912600	Weak transcription	Ovary	ovary
14	chr9:85897000-85912800	Weak transcription	Right Ventricle	heart
15	chr9:85897200-85912000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:85897200-85913000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:85897400-85914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:85902400-85907800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:85905600-85906800	Enhancers	Pancreas	Pancrea
22	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
23	chr9:85906000-85906600	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:85906000-85911600	Weak transcription	Left Ventricle	heart
25	chr9:85906200-85906400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr9:85906200-85906800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:85906200-85906800	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links