Variant report

Variant	rs11141936
Chromosome Location	chr9:72780009-72780010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10868610	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10868623	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142019	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11791792	0.87[EUR][1000 genomes]
rs11794396	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12005243	0.94[EUR][1000 genomes]
rs12341341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12341763	0.85[ASN][1000 genomes]
rs12343885	0.93[EUR][1000 genomes]
rs12352944	0.88[EUR][1000 genomes]
rs2148856	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744585	0.83[ASN][1000 genomes]
rs4744983	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59836712	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62570296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62570306	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7023586	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72726800-72785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:72741600-72789400	Weak transcription	Spleen	Spleen
3	chr9:72759600-72800000	Weak transcription	Right Ventricle	heart
4	chr9:72759800-72792200	Weak transcription	HMEC	breast
5	chr9:72760000-72785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:72766200-72785200	Weak transcription	Left Ventricle	heart
7	chr9:72767400-72780200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:72768600-72780200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:72770000-72783600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:72771600-72780200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:72773200-72783200	Weak transcription	Pancreas	Pancrea
12	chr9:72775200-72783600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:72775200-72800000	Weak transcription	Esophagus	oesophagus
14	chr9:72775800-72780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:72775800-72785200	Weak transcription	Adipose Nuclei	Adipose
16	chr9:72776800-72791800	Weak transcription	Fetal Lung	lung
17	chr9:72777000-72792400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:72777200-72780400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:72777200-72784800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:72777400-72789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:72777600-72783600	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:72777800-72785200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:72777800-72785400	Weak transcription	Ovary	ovary
24	chr9:72777800-72800000	Weak transcription	Fetal Stomach	stomach
25	chr9:72778400-72785400	Weak transcription	Aorta	Aorta
26	chr9:72778800-72780200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:72779000-72780600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr9:72779000-72780800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:72779200-72780600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:72779200-72789600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:72779200-72792400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:72779600-72780400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:72779600-72780800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr9:72779800-72780800	Genic enhancers	HSMMtube	muscle
35	chr9:72780000-72780400	Enhancers	Fetal Muscle Leg	muscle
36	chr9:72780000-72780600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:72780000-72780600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:72780000-72780600	Genic enhancers	HSMM	muscle
39	chr9:72780000-72780600	Enhancers	NH-A	brain
40	chr9:72780000-72780800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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