Variant report

Variant	rs7023586
Chromosome Location	chr9:72823434-72823435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10868610	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10868623	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11141936	0.90[EUR][1000 genomes]
rs11142019	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142141	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142346	0.93[AMR][1000 genomes]
rs11791792	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794396	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1180085	0.93[AMR][1000 genomes]
rs1180090	0.93[AMR][1000 genomes]
rs1180093	0.93[AMR][1000 genomes]
rs1180095	0.90[AMR][1000 genomes]
rs1180109	0.84[AMR][1000 genomes]
rs12005243	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12338030	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12341341	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12343885	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346675	0.83[EUR][1000 genomes]
rs12352944	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684881	0.83[EUR][1000 genomes]
rs2148856	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2183361	0.83[EUR][1000 genomes]
rs4507832	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744983	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59836712	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62570296	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62570306	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62570318	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72712267	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72712271	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7847861	0.83[EUR][1000 genomes]
rs7873075	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72809600-72837800	Weak transcription	NH-A	brain
4	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72820600-72826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:72820800-72827200	Weak transcription	Left Ventricle	heart
7	chr9:72820800-72827200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:72820800-72835400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:72821000-72827200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:72821000-72827400	Weak transcription	HSMM	muscle
11	chr9:72821200-72825800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:72821200-72827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72821200-72827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:72821200-72828200	Weak transcription	HSMMtube	muscle
15	chr9:72821200-72844800	Weak transcription	HMEC	breast
16	chr9:72821400-72826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:72821400-72827600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:72821400-72829800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:72821400-72830200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:72821400-72832000	Weak transcription	NHEK	skin

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