Variant report

Variant	rs4507832
Chromosome Location	chr9:72819587-72819588
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11142019	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11142141	0.82[AMR][1000 genomes]
rs11142346	0.82[AMR][1000 genomes]
rs11791792	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11794396	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1180085	0.82[AMR][1000 genomes]
rs1180090	0.82[AMR][1000 genomes]
rs1180093	0.82[AMR][1000 genomes]
rs12005243	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12343885	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12352944	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148856	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62570306	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62570318	0.82[AMR][1000 genomes]
rs7023586	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72712267	0.82[AMR][1000 genomes]
rs72712271	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72802200-72820000	Weak transcription	Fetal Lung	lung
4	chr9:72805200-72820200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:72806400-72819600	Weak transcription	Liver	Liver
6	chr9:72808000-72819600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:72808000-72819600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:72808000-72820000	Weak transcription	HMEC	breast
9	chr9:72808000-72820400	Weak transcription	Left Ventricle	heart
10	chr9:72808200-72820000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:72809400-72820400	Weak transcription	HSMM	muscle
12	chr9:72809600-72837800	Weak transcription	NH-A	brain
13	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:72811400-72820400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:72812000-72820400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:72812200-72819600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:72813000-72820000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:72813000-72820400	Weak transcription	HSMMtube	muscle
19	chr9:72819200-72820600	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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