Variant report

Variant	rs11142496
Chromosome Location	chr9:73197847-73197848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73144827..73147733-chr9:73196427..73198167,2	MCF-7	breast:
2	chr9:73197794..73199426-chr9:73200982..73203478,2	K562	blood:
3	chr9:73192089..73194618-chr9:73196288..73198776,2	K562	blood:
4	chr9:73197703..73200257-chr9:73201325..73204696,3	MCF-7	breast:
5	chr9:73036403..73038506-chr9:73197220..73199887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272232	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10735599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142498	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1890769	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744605	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744606	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744607	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9969856	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:73192400-73199800	Weak transcription	Left Ventricle	heart
5	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:73192800-73201000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:73193000-73201200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:73193000-73201200	Weak transcription	NHLF	lung
10	chr9:73193200-73198600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:73193200-73200200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:73193800-73201200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:73194000-73200200	Weak transcription	Right Ventricle	heart
14	chr9:73195000-73200200	Weak transcription	Right Atrium	heart
15	chr9:73195800-73201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:73196400-73203400	Weak transcription	HMEC	breast
17	chr9:73196600-73201400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:73196800-73200800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:73196800-73201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:73196800-73204600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:73197000-73200800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:73197000-73201000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:73197200-73201000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:73197200-73201200	Weak transcription	Brain Substantia Nigra	brain
25	chr9:73197400-73200800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links