Variant report

Variant	rs9969856
Chromosome Location	chr9:73211372-73211373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10735599	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142496	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142498	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890769	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744605	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744606	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744607	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73201200-73216200	Weak transcription	Lung	lung
3	chr9:73203000-73215200	Weak transcription	Fetal Brain Male	brain
4	chr9:73204600-73215200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:73205000-73215000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:73205000-73215200	Weak transcription	Right Atrium	heart
7	chr9:73205400-73214800	Weak transcription	NH-A	brain
8	chr9:73205400-73215600	Weak transcription	HMEC	breast
9	chr9:73206200-73215000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:73206200-73215400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:73206400-73212400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:73206400-73215000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:73206600-73227800	Weak transcription	Aorta	Aorta
14	chr9:73206800-73212600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:73209800-73214800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:73209800-73215000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:73210000-73215000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:73210000-73215000	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:73210400-73214800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:73210400-73214800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:73210400-73214800	Weak transcription	NHLF	lung
22	chr9:73210400-73215000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:73210400-73215000	Weak transcription	HSMM	muscle
24	chr9:73210400-73215000	Weak transcription	NHDF-Ad	bronchial
25	chr9:73210400-73215200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:73210400-73215600	Weak transcription	Brain Anterior Caudate	brain
27	chr9:73210400-73215800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:73210600-73214800	Weak transcription	Osteobl	bone
29	chr9:73210600-73215200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:73210600-73215200	Weak transcription	Adipose Nuclei	Adipose
31	chr9:73210800-73214800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:73210800-73215000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:73211000-73215000	Weak transcription	HSMMtube	muscle

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