Variant report

Variant	rs11142536
Chromosome Location	chr9:73280000-73280001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10780961	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10868860	0.88[EUR][1000 genomes]
rs11142554	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11142556	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11142557	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11142558	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11790001	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1410374	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1571329	0.95[CEU][hapmap]
rs17460690	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1831144	0.95[CEU][hapmap]
rs56335964	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73279800-73280000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:73279800-73280000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr9:73279800-73280000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr9:73279800-73281400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:73280000-73280200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
6	chr9:73280000-73280400	Active TSS	Primary T cells fromperipheralblood	blood
7	chr9:73280000-73280400	Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr9:73280000-73280400	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr9:73280000-73280400	Active TSS	Duodenum Mucosa	Duodenum
10	chr9:73280000-73280400	Active TSS	GM12878-XiMat	blood
11	chr9:73280000-73280600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:73280000-73281000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:73280000-73281200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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