Variant report

Variant	rs11142588
Chromosome Location	chr9:73397392-73397393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10435960	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511986	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10868883	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142550	0.81[AMR][1000 genomes]
rs11142553	0.81[AMR][1000 genomes]
rs11142562	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11142564	0.85[AMR][1000 genomes]
rs11142567	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11142570	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142573	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142574	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142575	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142577	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142578	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142581	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142582	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142586	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11142587	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11142589	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11531868	0.87[AMR][1000 genomes]
rs12236832	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12684073	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12685630	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12685885	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1328147	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4745036	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4745037	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4745039	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56882913	0.84[AMR][1000 genomes]
rs56904143	0.85[AMR][1000 genomes]
rs60753490	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60859076	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72614623	0.81[AMR][1000 genomes]
rs72614624	0.81[AMR][1000 genomes]
rs72614626	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73375600-73398400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73390600-73399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:73392000-73404600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73396400-73400800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:73396800-73417800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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