Variant report

Variant	rs11142550
Chromosome Location	chr9:73301043-73301044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73295277..73297439-chr9:73299280..73301528,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10435960	0.82[AMR][1000 genomes]
rs10511986	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10868883	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142514	0.80[EUR][1000 genomes]
rs11142518	0.89[EUR][1000 genomes]
rs11142522	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142523	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142545	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142552	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142553	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142562	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142564	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142567	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142570	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142573	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142574	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142575	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142577	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142578	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142581	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142582	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142586	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11142587	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11142588	0.81[AMR][1000 genomes]
rs11531868	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12236832	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12682954	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684073	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12684412	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685630	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12685885	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17055447	0.86[EUR][1000 genomes]
rs4745036	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4745037	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4745039	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56697575	0.89[EUR][1000 genomes]
rs56882913	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56904143	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59110702	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60753490	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60859076	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72614623	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614624	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614626	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7870794	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	esv3348607	chr9:73299482-73302955	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73295800-73310400	Weak transcription	Pancreas	Pancrea

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