Variant report

Variant	rs11142522
Chromosome Location	chr9:73252273-73252274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11142514	0.88[EUR][1000 genomes]
rs11142518	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142523	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142545	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142550	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142552	0.84[AMR][1000 genomes]
rs11142553	0.85[AMR][1000 genomes]
rs11142586	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12682954	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12684412	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17055447	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56697575	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59110702	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614623	0.85[AMR][1000 genomes]
rs72614624	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73235200-73255400	Weak transcription	Brain Substantia Nigra	brain
2	chr9:73235400-73255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73237600-73256000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73243200-73252800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:73243400-73254400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:73243600-73255400	Weak transcription	Psoas Muscle	Psoas
7	chr9:73246200-73254800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:73248400-73255400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:73250400-73254200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:73251200-73256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:73251400-73255200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:73251600-73252400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:73251600-73255400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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