Variant report

Variant	rs56697575
Chromosome Location	chr9:73240674-73240675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11142514	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11142518	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142522	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142523	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142545	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11142550	0.89[EUR][1000 genomes]
rs11142552	0.88[AFR][1000 genomes]
rs11142553	0.88[AFR][1000 genomes]
rs12682954	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12684412	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17055447	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59110702	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72614623	0.88[AFR][1000 genomes]
rs72614624	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73217400-73242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:73224800-73241600	Weak transcription	Ovary	ovary
3	chr9:73230600-73243200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73230800-73243000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:73235200-73255400	Weak transcription	Brain Substantia Nigra	brain
6	chr9:73235400-73245200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:73235400-73255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73235800-73243000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73237600-73256000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:73240200-73241400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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